Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs3796833 chr4:10012878 C/T 3.45E-5 184 13.07 13.87 8.02 KM Plot
ESCA rs3796834 chr4:10012846 C/T 1.22E-5 184 13.1 13.6 10.13 KM Plot
ESCA rs3808359 chr8:103563312 C/T 1.54E-6 177 13.38 13.33 3.83 KM Plot
ESCA rs3810176 chr19:49496786 A/G 4.29E-6 184 2.93 16.42 12.93 KM Plot
ESCA rs3912359 chr8:2413553 C/T 4.67E-9 181 13.1 15.57 2.93 KM Plot
ESCA rs41265401 chr6:170176146 G/A 4.5E-8 183 12.87 21.3 1.57 KM Plot
ESCA rs41310567 chr1:247200491 A/G 6.21E-7 181 13.03 15.57 3.87 KM Plot
ESCA rs41315254 chr1:3698402 A/G 1.75E-12 183 13.03 16.4 2.27 KM Plot
ESCA rs4132186 chr8:2438697 A/C 2.16E-9 178 13.33 14.65 2.93 KM Plot
ESCA rs413275 chr2:118574344 T/C 1.22E-5 178 2.93 17.5 13.03 KM Plot
ESCA rs4338818 chr16:7449675 G/C 2.88E-5 180 4 15.85 13.07 KM Plot
ESCA rs4380972 chr8:120050081 C/T 8.76E-7 184 13.03 16.7 2.7 KM Plot
ESCA rs4391034 chr4:10049700 T/C 8.39E-6 180 13.1 14.13 8.02 KM Plot
ESCA rs4448262 chr8:67399516 C/A 2.02E-8 177 13.03 13.38 3.43 KM Plot
ESCA rs45490598 chr14:101538844 A/T 2.66E-8 177 13.07 13.98 1.57 KM Plot